BioPAX-OBO

Nearby: Main BioPAX wiki, Google group

Scope
to be updated
 * Represent biomolecular interactions in a manner that has semantic content
 * Facilitate combination of information coming from different sources so that client need not know source details
 * Aggressive detection of inconsistencies
 * Not covering extraneous content or data format details, such as ordering of assertions or duplicate set elements
 * Loading information into databases is not out of the question but is not in scope for this project

People and expertise
please add a link to a description of relevant expertise for this project
 * Michael Dumontier
 * Olivier Roubenacker
 * Andrea Splendiani
 * please continue!

Next meeting
cc-10-03-2009

Past meetings
cc-24-02-2009

Mailing list
Discussion on biopax-obo is carried through the biopax-obo mailing list.

Project resources

 * Reactome in RDF (D2RQ view on the relational DB form)
 * Triple store for our development use (at Neurocommons)
 * Debugging the Bug

External resources

 * OBO Foundry, BFO, RO, etc.

Project Notes
Things for people to work on, when they feel like doing something


 * Method
 * Ontology Work
 * Validation activities and use cases
 * Dissemination
 * Possible next steps
 * Work in progress