RDF graphs v0

'''The information on this page is obsolete. Please see Bundles for current description of the Neurocommons distribution and triple store contents.'''

(Back to Conversions, RDF distribution, Triple store)

This page documents an older version of the Neurocommons distribution. It was replaced on 2008-09-28.

The RDF distribution is loaded into the Neurocommons triple store in a number of separate named graphs, as described below. See http://ashby.csail.mit.edu:8890/nsparql/.

Terms of use: http://sw.neurocommons.org/2007/kb-sources/README.html

  http://purl.org/commons/hcls/20070416  OBO ontologies: MP, GO, ECO, OBO_REL, SKOS, MeSH in SKOS, SWAN ontology and selected curation, plasmids from Addgene.  http://purl.org/commons/hcls/gene  basic entrez gene information for human, mouse, rat entries, plus homologene for same species (see Entrez Gene conversion)  http://purl.org/commons/hcls/20070416/classrelations  Transitive and other inferred relations  http://purl.org/commons/hcls/goa  Gene ontology annotations, related to Entrez Gene ids (see GO annotations conversion)  http://purl.org/commons/hcls/goa4  Gene ontology annotations, related to entrez gene ids (EBI version)  http://purl.org/commons/hcls/senselab  Neurondb and Brainpharm  http://purl.org/commons/hcls/pubmesh  2007 MeSH to Medline associations, Medline title and dates, gene to paper (pubmed) links.  http://sw.neurocommons.org/2007/2007-03-15/pubmed-annotations <dd> Neurocommons text processing pilot <dt> http://sw.neurocommons.org/2007/aba-20070226 <dd> Allen Brain Atlas gene to image section mapping (late notice - there appears to be an issue with some of this data missing - we will reload and leave a note here when done) <dt> http://purl.org/commons/galen/ <dd>The full Galen ontology from the Co-ode site. <dt> http://purl.org/hcls/potluck <dd>The ontologies that were on the OBO site on May 28, 2007 <dt> http://purl.org/commons/nci/thesaurus707c/ <dd> NCI Thesaurus, version 07.07c <dt> http://purl.org/hcls/radlex20071101 <dd> Radlex owl conversion (alpha) <dt> http://purl.org/science/graph/ncbi_gene <dd> June 2008 Entrez Gene conversion <dt> http://purl.obofoundry.org/science/ontology/langual <dd> July 2008 http://purl.obofoundry.org/science/ontology/langual.owl see http://www.langual.org/, conversion script </dl>

MeSH data are drawn from the 2007 version of MeSH, and the Medline records consulted were those from the 2007 baseline of Medline.

Last modified 03:32, 1 June 2008 (UTC)