Semantic resources project

This page is the home page for the Semantic Resources project, a collaboration between Science Commons and the Science Collaboration Framework.

Resources
Per the meeting notes, we have identified five resources to pursue:
 * 1) Antibodies
 * 2) Mouse Models
 * 3) SWAN : Semantic Web Applications in Neuroscience
 * 4) PRO : Protein Ontology
 * 5) CT : Cell Type Ontology

There was a candidate list of resources that were considered for investigation.

Infrastructure
The architecture document outlines our goals for the completed structure and operation of this project.

We are collecting installation and usage instructions for the different software packages involved in this project.


 * 1) Antibody Record Annotator
 * 2) Ontological Query Interface
 * 3) Ontological Term Request Broker
 * 4) Contextual Annotation Cache

These, along with the resources developed as part of this project, are packaged and delivered as an Appliance.

Scientific Use Cases
Meetings with scientists and collaborators have been conducted.

These meetings are used to motivate our development of Scientific Use Cases.

/Validation and Rewriting Rules for Free Text Entry

Meeting notes
Our weekly collaboration meetings are on Thursdays at 10am.
 * May 18, 2009
 * May 22, 2009
 * June 2, 2009
 * June 19, 2009
 * July 16, 2009
 * August 27, 2009
 * September 10, 2009
 * September 17, 2009
 * September 24, 2009
 * October 1, 2009
 * October 8, 2009
 * October 15, 2009
 * October 22, 2009
 * October 29, 2009
 * November 5, 2009 : Cancelled
 * November 12, 2009
 * November 17, 2009 : Paolo, Elizabeth and Don Hatfield (AlzForum)
 * November 19, 2009


 * January 14, 2010
 * January 21, 2010
 * February 11, 2010
 * February 21, 2010
 * March 18, 2010
 * April 1, 2010
 * April 8, 2010
 * April 15, 2010
 * April 29, 2010


 * September 2, 2010


 * September 13, 2010
 * September 16, 2010
 * September 23, 2010
 * September 30, 2010
 * October 7, 2010


 * ?October 14, 2010?


 * October 21, 2010


 * November 11, 2010
 * November 18, 2010
 * November 25, 2010: Cancelled (Thanksgiving)

Future Work
We have identified a priority list for work in the immediate future. We are also compiling a description of our experiences, both social and engineering, during the course of this project.

Reference & Background

 * Curation status documentation.
 * Note that this documentation has not been updated to reflect the fact that these terms have been moved to IAO's ontology-metadata.owl


 * /Neurocommons Pubmed Infrastructure
 * Literature & References