ImmPort/Blast Report

Blast runs
connolly@pav:~/projects/packages/pdbsc$ make -k -j2 blast-all >make.out; cat make.out PYTHONPATH=~/lib/python2.5/site-packages python matchph.py --pdb-fasta /tmp/danc/work/pdbsc PYTHONPATH=~/lib/python2.5/site-packages python matchph.py --hla-fasta /tmp/danc/cache/pdbsc/../hla/hla.dat /tmp/danc/work/pdbsc/hla_alleles.fasta PYTHONPATH=~/lib/python2.5/site-packages python matchph.py --pdb-fasta /tmp/danc/work/pdbsc (cd /tmp/danc/work/pdbsc; formatdb -i hla_alleles.fasta -p T -o T) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1M_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1M_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1M_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1M_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1N_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1N_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1N_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1N_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1N_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1N_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1O_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1O_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1O_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1O_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1O_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1O_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A6A_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A6A_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A6A_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A6A_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A6A_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A6A_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9B_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9B_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9E_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9E_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9E_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9E_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A9E_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A9E_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGB_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGB_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGC_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGC_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGC_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGC_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGC_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGC_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGD_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGD_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGD_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGD_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGD_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGD_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AGF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AGF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AKJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AKJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AKJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AKJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AKJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AKJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AKJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AKJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AKJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AKJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AO7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AO7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AO7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AO7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AO7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AO7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AO7_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AO7_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1AO7_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1AO7_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1B0R_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1B0R_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1B0R_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1B0R_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1B0R_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1B0R_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BD2_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BD2_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BD2_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BD2_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BD2_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BD2_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BD2_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BD2_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BD2_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BD2_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BXT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BXT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1BXT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1BXT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1CG9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1CG9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1CG9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1CG9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1CG9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1CG9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5M_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5M_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5M_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5M_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5M_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5M_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5M_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5M_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5X_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5X_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5X_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5X_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5X_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5X_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5X_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5X_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5Z_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5Z_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5Z_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5Z_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5Z_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5Z_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D5Z_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D5Z_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D6E_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D6E_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D6E_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D6E_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D6E_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D6E_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1D6E_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1D6E_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUY_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUY_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1DUZ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1DUZ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E27_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E27_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E27_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E27_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E27_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E27_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E28_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E28_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E28_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E28_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1E28_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1E28_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EEY_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EEY_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EFX_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EFX_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EFX_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EFX_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EFX_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EFX_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EFX_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EFX_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1EFX_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1EFX_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1FYT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1FYT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1FYT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1FYT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1FYT_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1FYT_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1FYT_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1FYT_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1FYT_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1FYT_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1GZP_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1GZP_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1GZP_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1GZP_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1GZQ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1GZQ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1GZQ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1GZQ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1H15_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1H15_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HDM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HDM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HDM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HDM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHG_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHG_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHH_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHH_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHH_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHH_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHH_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHH_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHI_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHI_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHJ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHJ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HHK_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HHK_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HQR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HQR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HQR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HQR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HQR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HQR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HQR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HQR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSA_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSA_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HSB_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HSB_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HXY_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HXY_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HXY_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HXY_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HXY_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HXY_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1HXY_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1HXY_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I4F_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I4F_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I4F_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I4F_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I4F_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I4F_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7R_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7R_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7T_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7T_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1I7U_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1I7U_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM3_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM3_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1IM9_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1IM9_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1J8H_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1J8H_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1J8H_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1J8H_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1J8H_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1J8H_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1J8H_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1J8H_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1J8H_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1J8H_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JF1_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JF1_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JF1_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JF1_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JF1_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JF1_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGD_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGD_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGD_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGD_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGD_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGD_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JGE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JGE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JHT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JHT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JHT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JHT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JHT_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JHT_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_9.xml) [blastall] WARNING: 1JJ2_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1JJ2_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1JJ2_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JJ2_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JJ2_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWM_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWM_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWM_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWM_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWS_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWS_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWU_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWU_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWU_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWU_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWU_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWU_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1JWU_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1JWU_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K5N_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K5N_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K5N_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K5N_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K5N_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K5N_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_B.xml) [blastall] WARNING: 1K73_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1K73_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1K73_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K73_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K73_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_B.xml) [blastall] WARNING: 1K8A_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1K8A_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1K8A_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K8A_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K8A_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_C.xml) [blastall] WARNING: 1K9M_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1K9M_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1K9M_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1K9M_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1K9M_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_C.xml) [blastall] WARNING: 1KC8_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1KC8_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1KC8_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KC8_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KC8_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_B.xml) [blastall] WARNING: 1KD1_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1KD1_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1KD1_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KD1_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KD1_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLG_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLG_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLG_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLG_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLG_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLU_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLU_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLU_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLU_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLU_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLU_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KLU_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KLU_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KPR_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KPR_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_9.xml) [blastall] WARNING: 1KQS_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1KQS_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1KQS_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KQS_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KQS_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1KTL_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1KTL_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LO5_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LO5_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LO5_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LO5_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LO5_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LO5_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LO5_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LO5_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1LP9_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1LP9_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M05_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M05_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_B.xml) [blastall] WARNING: 1M1K_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1M1K_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1M1K_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M1K_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M1K_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M6O_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M6O_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M6O_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M6O_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M6O_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M6O_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_B.xml) [blastall] WARNING: 1M90_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1M90_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1M90_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1M90_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1M90_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MHE_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MHE_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MI5_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MI5_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MI5_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MI5_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MI5_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MI5_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MI5_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MI5_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1MI5_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1MI5_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N2R_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N2R_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N2R_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N2R_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N2R_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N2R_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_B.xml) [blastall] WARNING: 1N8R_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1N8R_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1N8R_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1N8R_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1N8R_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_C.xml) [blastall] WARNING: 1NJI_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1NJI_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1NJI_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1NJI_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1NJI_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OF2_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OF2_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OF2_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OF2_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OF2_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OF2_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGA_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGA_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGA_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGA_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGA_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGA_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1OGT_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1OGT_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1P7Q_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1P7Q_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1P7Q_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1P7Q_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1P7Q_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1P7Q_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1P7Q_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1P7Q_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1PYW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1PYW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1PYW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1PYW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1PYW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1PYW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1PYW_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1PYW_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_B.xml) [blastall] WARNING: 1Q7Y_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1Q7Y_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1Q7Y_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q7Y_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q7Y_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_B.xml) [blastall] WARNING: 1Q81_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1Q81_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1Q81_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q81_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q81_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_B.xml) [blastall] WARNING: 1Q82_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1Q82_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1Q82_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q82_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q82_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_6.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_6.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_B.xml) [blastall] WARNING: 1Q86_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1Q86_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1Q86_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q86_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q86_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1Q94_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1Q94_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QEW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QEW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QEW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QEW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QEW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QEW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QQD_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QQD_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QQD_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QQD_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QQD_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QQD_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QRN_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QRN_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QRN_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QRN_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QRN_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QRN_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QRN_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QRN_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QRN_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QRN_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSF_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSF_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QSF_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QSF_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_9.xml) [blastall] WARNING: 1QVF_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1QVF_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1QVF_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVF_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVF_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_9.xml) [blastall] WARNING: 1QVG_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1QVG_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_A.xml) make: *** [/tmp/danc/work/pdbsc/1QVG_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVG_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVG_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1QVO_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1QVO_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1R5I_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1R5I_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_9.xml) [blastall] WARNING: 1S72_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 1S72_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/1S72_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S72_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S72_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S8D_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S8D_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S8D_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S8D_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S8D_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S8D_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9V_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9V_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9X_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9X_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9X_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9X_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9X_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9X_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9Y_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9Y_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9Y_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9Y_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1S9Y_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1S9Y_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SEB_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SEB_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJH_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJH_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJH_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJH_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJH_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJH_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SJH_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SJH_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYV_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYV_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYV_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYV_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1SYV_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1SYV_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1X_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1X_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1X_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1X_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1X_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1X_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Y_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Y_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Y_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Y_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Y_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Y_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Z_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Z_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Z_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Z_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T1Z_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T1Z_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T20_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T20_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T20_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T20_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T20_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T20_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T21_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T21_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T21_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T21_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T21_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T21_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T22_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T22_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T22_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T22_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T22_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T22_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5W_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5W_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5X_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5X_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5X_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5X_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5X_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5X_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1T5X_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1T5X_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TMC_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TMC_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TMC_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TMC_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TMC_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TMC_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVB_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVB_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1TVH_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1TVH_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UQS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UQS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UQS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UQS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UVQ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UVQ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UVQ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UVQ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UVQ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UVQ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1UXW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1UXW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0V_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0V_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0V_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0V_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0V_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0V_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W0W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W0W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1W72_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1W72_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1X7Q_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1X7Q_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1X7Q_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1X7Q_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1X7Q_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1X7Q_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XH3_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XH3_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XH3_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XH3_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XH3_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XH3_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR8_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR8_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR8_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR8_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR8_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR8_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1XR9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1XR9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YDP_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YDP_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YDP_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YDP_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YDP_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YDP_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YMM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YMM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YMM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YMM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YMM_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YMM_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YMM_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YMM_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1YMM_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1YMM_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZGL_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZGL_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZHL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZHL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZSD_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZSD_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZSD_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZSD_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1ZSD_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1ZSD_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2A83_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2A83_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2A83_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2A83_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2A83_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2A83_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AK4_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AK4_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV1_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV1_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AV7_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AV7_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXG_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2AXG_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2AXG_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BC4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BC4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BC4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BC4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BC4_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BC4_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BC4_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BC4_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BCK_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BCK_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNQ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNQ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNQ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNQ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNQ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNQ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNQ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNQ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNQ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNQ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BNR_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BNR_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BSS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BSS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BST_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BST_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BST_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BST_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BST_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BST_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVO_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVO_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVO_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVO_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVO_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVO_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVP_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVP_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVP_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVP_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVP_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVP_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVQ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVQ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVQ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVQ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2BVQ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2BVQ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C7U_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C7U_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9L_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9L_A.xml) [blastall] WARNING: 2C9L_A: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2C9L_A: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2C9L_A.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9L_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9L_B.xml) [blastall] WARNING: 2C9L_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2C9L_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2C9L_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9L_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9L_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9L_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9L_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9N_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9N_A.xml) [blastall] WARNING: 2C9N_A: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2C9N_A: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2C9N_A.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9N_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9N_B.xml) [blastall] WARNING: 2C9N_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2C9N_B: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2C9N_B.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9N_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9N_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2C9N_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2C9N_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDG_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CDG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CDG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CII_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CII_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CII_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CII_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CII_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CII_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CIK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CIK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CIK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CIK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CIK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CIK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CJR_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CJR_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLR_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLR_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2CLZ_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2CLZ_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2D31_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2D31_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2DYP_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2DYP_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2DYP_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2DYP_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2DYP_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2DYP_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2DYP_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2DYP_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2E50_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2E50_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2E50_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2E50_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2E50_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2E50_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2E50_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2E50_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ESV_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ESV_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ESV_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ESV_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ESV_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ESV_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ESV_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ESV_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ESV_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ESV_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F53_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F53_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F53_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F53_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F53_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F53_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F53_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F53_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F53_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F53_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2F54_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2F54_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FSE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FSE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FYY_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FYY_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FYY_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FYY_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FYY_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FYY_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FZ3_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FZ3_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FZ3_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FZ3_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2FZ3_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2FZ3_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2G9H_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2G9H_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2G9H_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2G9H_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2G9H_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2G9H_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2G9H_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2G9H_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GIT_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GIT_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GJ6_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GJ6_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GJ6_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GJ6_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GJ6_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GJ6_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GJ6_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GJ6_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GJ6_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GJ6_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GT9_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GT9_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTW_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTW_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GTZ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GTZ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2GUO_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2GUO_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2H6P_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2H6P_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2H6P_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2H6P_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2H6P_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2H6P_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HJL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HJL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HLA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HLA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HLA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HLA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HN7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HN7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HN7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HN7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HN7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HN7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HP4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HP4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2HP4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2HP4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAM_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAM_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAM_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAM_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAM_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAM_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IAN_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IAN_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2ICW_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2ICW_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IPK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IPK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IPK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IPK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IPK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IPK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2IPK_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2IPK_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2J8U_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2J8U_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JCC_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JCC_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE0_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE0_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE1_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE1_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE1_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE1_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE1_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE1_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2JE1_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2JE1_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NW3_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NW3_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NW3_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NW3_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NW3_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NW3_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2NX5_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2NX5_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2O8J_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2O8J_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2O8J_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2O8J_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2O8J_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2O8J_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2O8J_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2O8J_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OJE_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OJE_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_9.xml) [blastall] WARNING: 2OTJ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2OTJ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2OTJ_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTJ_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTJ_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_9.xml) [blastall] WARNING: 2OTL_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 2OTL_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/2OTL_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2OTL_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2OTL_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5E_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5E_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5E_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5E_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5E_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5E_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5E_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5E_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5E_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5E_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5W_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5W_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2P5W_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2P5W_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2PYE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2PYE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2PYE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2PYE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2PYE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2PYE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2PYE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2PYE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2PYE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2PYE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2Q6W_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2Q6W_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2RFX_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2RFX_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2RFX_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2RFX_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2RFX_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2RFX_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2SEB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2SEB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2SEB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2SEB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2SEB_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2SEB_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2SEB_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2SEB_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2UWE_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2UWE_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2W_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2W_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2V2X_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2V2X_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLK_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLK_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLK_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLK_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLK_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLK_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLK_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLK_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLK_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLK_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLL_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLL_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2VLR_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2VLR_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 2WBJ_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/2WBJ_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B3I_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B3I_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B3I_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B3I_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B3I_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B3I_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B6S_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B6S_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B6S_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B6S_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3B6S_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3B6S_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEV_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEV_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEV_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEV_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEV_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEV_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BEW_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BEW_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BGM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BGM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BGM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BGM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BGM_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BGM_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH8_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH8_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH8_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH8_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH8_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH8_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BH9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BH9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BHB_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BHB_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BHB_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BHB_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BHB_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BHB_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BO8_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BO8_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BO8_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BO8_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BO8_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BO8_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP4_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP4_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BP7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BP7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BVN_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BVN_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BW9_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BW9_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BW9_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BW9_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BW9_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BW9_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BWA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BWA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BWA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BWA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BWA_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BWA_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BXN_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BXN_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BXN_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BXN_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BXN_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BXN_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZE_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZE_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3BZF_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3BZF_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5J_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5J_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5J_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5J_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5J_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5J_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C5Z_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C5Z_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C9N_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C9N_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C9N_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C9N_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3C9N_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3C9N_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_9.xml) [blastall] WARNING: 3CC2_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CC2_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CC2_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC2_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC2_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_9.xml) [blastall] WARNING: 3CC4_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CC4_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CC4_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC4_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC4_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_9.xml) [blastall] WARNING: 3CC7_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CC7_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CC7_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CC7_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CC7_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_9.xml) [blastall] WARNING: 3CCE_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCE_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCE_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCE_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCE_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_9.xml) [blastall] WARNING: 3CCJ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCJ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCJ_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCJ_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCJ_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_9.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_A.xml) [blastall] WARNING: 3CCL_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCL_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCL_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCL_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCL_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_9.xml) [blastall] WARNING: 3CCM_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCM_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCM_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCM_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCM_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_9.xml) [blastall] WARNING: 3CCQ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCQ_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_A.xml) make: *** [/tmp/danc/work/pdbsc/3CCQ_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCQ_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCQ_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_9.xml) [blastall] WARNING: 3CCR_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCR_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCR_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCR_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCR_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_9.xml) [blastall] WARNING: 3CCS_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCS_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCS_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCS_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCS_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_9.xml) [blastall] WARNING: 3CCU_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCU_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCU_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCU_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCU_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_9.xml) [blastall] WARNING: 3CCV_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CCV_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CCV_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CCV_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CCV_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_9.xml) [blastall] WARNING: 3CD6_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CD6_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CD6_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CD6_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CD6_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CDG_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CDG_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CII_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CII_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_6.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_6.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_9.xml) [blastall] WARNING: 3CMA_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CMA_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CMA_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CMA_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CMA_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_6.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_6.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_9.xml) [blastall] WARNING: 3CME_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CME_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CME_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CME_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CME_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_9.xml) [blastall] WARNING: 3CPW_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3CPW_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3CPW_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CPW_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CPW_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CZF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CZF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CZF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CZF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3CZF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3CZF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D18_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D18_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D18_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D18_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D18_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D18_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D25_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D25_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D25_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D25_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D25_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D25_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D39_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D39_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D39_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D39_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D39_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D39_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D39_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D39_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D39_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D39_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D3V_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D3V_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D3V_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D3V_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D3V_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D3V_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D3V_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D3V_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3D3V_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3D3V_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DM1_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DM1_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DTX_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DTX_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DTX_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DTX_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DTX_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DTX_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX6_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX6_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX6_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX6_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX6_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX6_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX7_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX7_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX7_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX7_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX7_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX7_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX8_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX8_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX8_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX8_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DX8_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DX8_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3DXA_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3DXA_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_4.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_4.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_5.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_5.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_6.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_6.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_7.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_7.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_8.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_8.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3F1F_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3F1F_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FFC_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FFC_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQN_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQN_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQN_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQN_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQN_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQN_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQR_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQR_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQR_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQR_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQR_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQR_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQT_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQT_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQT_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQT_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQT_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQT_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQU_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQU_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQU_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQU_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQU_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQU_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQW_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQW_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQW_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQW_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQW_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQW_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQX_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQX_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQX_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQX_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FQX_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FQX_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT2_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT2_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT2_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT2_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT2_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT2_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT3_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT3_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT3_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT3_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT3_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT3_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT4_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT4_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT4_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT4_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3FT4_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3FT4_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_9.xml) [blastall] WARNING: 3G4S_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3G4S_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3G4S_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G4S_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G4S_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_9.xml) [blastall] WARNING: 3G6E_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3G6E_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3G6E_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G6E_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G6E_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_0.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_0.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_1.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_1.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_2.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_2.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_3.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_3.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_9.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_9.xml) [blastall] WARNING: 3G71_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options [blastall] WARNING: 3G71_9: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options make: *** [/tmp/danc/work/pdbsc/3G71_9.xml] Error 1 (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_U.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_U.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_V.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_V.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_W.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_W.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_X.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_X.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_Y.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_Y.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3G71_Z.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3G71_Z.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3GJF_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3GJF_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_H.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_H.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_I.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_I.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_J.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_J.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_K.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_K.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_L.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_L.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_M.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_M.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_N.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_N.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_O.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_O.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_P.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_P.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_Q.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_Q.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_R.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_R.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_S.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_S.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HAE_T.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HAE_T.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HCV_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HCV_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HCV_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HCV_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 3HCV_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/3HCV_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_A.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_A.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_B.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_C.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_C.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_D.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_D.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_E.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_E.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_F.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_F.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 7AHL_G.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/7AHL_G.xml) (cd /tmp/danc/work/pdbsc; blastall -p blastp -i 1A1M_B.fasta \		-d hla_alleles.fasta -m 7 -o /tmp/danc/work/pdbsc/1A1M_B.xml) make: Target `blast-all' not remade because of errors.

Post processing
connolly@pav:~/projects/packages/pdbsc$ grep WARNING make.out | wc    86    2236   17028

connolly@pav:~/projects/packages/pdbsc$ python blast_report.py /tmp/danc/work/pdbsc/*.xml 1A1M A HLA-B*530101 Identities = 275/276 (99%) Score = 579 bits 1A1N A HLA-B*350101 Identities = 275/276 (99%) Score = 579 bits 1A1N A HLA-B*3542 Identities = 275/276 (99%) Score = 577 bits 1A1O A HLA-B*530101 Identities = 275/276 (99%) Score = 580 bits 1A6A A HLA-DRA*010202 Identities = 176/176 (100%) Score = 368 bits 1A6A A HLA-DRA*0101 Identities = 176/176 (100%) Score = 368 bits 1A6A A HLA-DRA*010201 Identities = 176/176 (100%) Score = 365 bits 1A6A B HLA-DRB1*030102 Identities = 187/187 (100%) Score = 393 bits 1A6A B HLA-DRB1*03010102 Identities = 187/187 (100%) Score = 393 bits 1A6A B HLA-DRB1*03010101 Identities = 187/187 (100%) Score = 393 bits 1A9B A HLA-B*350101 Identities = 277/277 (100%) Score = 583 bits 1A9B A HLA-B*3542 Identities = 277/277 (100%) Score = 581 bits 1A9E A HLA-B*350101 Identities = 277/277 (100%) Score = 583 bits 1A9E A HLA-B*3542 Identities = 277/277 (100%) Score = 581 bits 1AGB A HLA-B*080101 Identities = 276/276 (100%) Score = 583 bits 1AGC A HLA-B*080101 Identities = 276/276 (100%) Score = 583 bits 1AGD A HLA-B*080101 Identities = 276/276 (100%) Score = 583 bits 1AGE A HLA-B*080101 Identities = 276/276 (100%) Score = 583 bits 1AGF A HLA-B*080101 Identities = 276/276 (100%) Score = 583 bits 1AKJ A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 1AKJ A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 1AKJ A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 1AKJ A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 1AO7 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1AO7 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1AO7 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1AO7 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1B0R A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1B0R A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1B0R A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1B0R A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1BD2 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1BD2 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1BD2 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1BD2 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1CG9 A HLA-B*350101 Identities = 276/277 (99%) Score = 581 bits 1CG9 A HLA-B*3542 Identities = 276/277 (99%) Score = 578 bits 1D5M A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1D5M A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1D5M B HLA-DRB1*040101 Identities = 191/192 (99%) Score = 403 bits 1D5X A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1D5X A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1D5X B HLA-DRB1*040101 Identities = 192/192 (100%) Score = 404 bits 1D5Z A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1D5Z A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1D5Z B HLA-DRB1*040101 Identities = 192/192 (100%) Score = 404 bits 1D6E A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1D6E A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1D6E B HLA-DRB1*040101 Identities = 192/192 (100%) Score = 404 bits 1DUY A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1DUY A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1DUY A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1DUY A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1DUZ A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1DUZ A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1DUZ A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1DUZ A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1E27 A HLA-B*510102 Identities = 276/276 (100%) Score = 583 bits 1E27 A HLA-B*510101 Identities = 276/276 (100%) Score = 583 bits 1E28 A HLA-B*510102 Identities = 275/276 (99%) Score = 580 bits 1E28 A HLA-B*510101 Identities = 275/276 (99%) Score = 580 bits 1EEY A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1EEY A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1EEY A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1EEY A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1EFX A HLA-Cw*030402 Identities = 278/278 (100%) Score = 583 bits 1EFX A HLA-Cw*030401 Identities = 278/278 (100%) Score = 583 bits 1FYT A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1FYT A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1FYT B HLA-DRB1*010101 Identities = 192/192 (100%) Score = 403 bits 1H15 A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1H15 A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1H15 B HLA-DRB5*010101 Identities = 190/190 (100%) Score = 402 bits 1H15 D HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1H15 D HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1H15 E HLA-DRB5*010101 Identities = 190/190 (100%) Score = 402 bits 1HDM A HLA-DMA*0101 Identities = 198/204 (97%) Score = 396 bits 1HDM B HLA-DMB*0101 Identities = 193/200 (96%) Score = 392 bits 1HHG A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1HHG A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1HHG A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1HHG A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1HHH A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1HHH A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1HHH A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1HHH A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1HHI A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1HHI A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1HHI A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1HHI A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1HHJ A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1HHJ A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1HHJ A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1HHJ A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1HHK A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1HHK A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1HHK A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1HHK A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1HQR A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1HQR A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1HQR B HLA-DRB5*010101 Identities = 190/190 (100%) Score = 402 bits 1HSA A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 1HSA A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 1HSB A HLA-A*680102 Identities = 270/270 (100%) Score = 570 bits 1HSB A HLA-A*680101 Identities = 270/270 (100%) Score = 570 bits 1HSB A HLA-A*680106 Identities = 270/270 (100%) Score = 569 bits 1HXY A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1HXY A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1HXY B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1I4F A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1I4F A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1I4F A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1I4F A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1I7R A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1I7R A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1I7R A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1I7R A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1I7T A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1I7T A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1I7T A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1I7T A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1I7U A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1I7U A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1I7U A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1I7U A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1IM3 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1IM3 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1IM3 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1IM3 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1IM9 A HLA-Cw*0409N Identities = 264/275 (96%) Score = 554 bits 1IM9 A HLA-Cw*04010103 Identities = 264/275 (96%) Score = 553 bits 1IM9 A HLA-Cw*04010102 Identities = 264/275 (96%) Score = 553 bits 1IM9 A HLA-Cw*04010101 Identities = 264/275 (96%) Score = 553 bits 1IM9 A HLA-Cw*0430 Identities = 264/275 (96%) Score = 552 bits 1J8H A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1J8H A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1J8H B HLA-DRB1*040101 Identities = 191/192 (99%) Score = 403 bits 1JF1 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1JF1 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1JF1 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1JF1 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1JGD A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 1JGE A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 1JGE A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 1JHT A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1JHT A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1JHT A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1JHT A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1JWM A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1JWM A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1JWM B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1JWS A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1JWS A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1JWS B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1JWU A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1JWU A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1JWU B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1K5N A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 1KLG A HLA-DRA*010202 Identities = 177/177 (100%) Score = 369 bits 1KLG A HLA-DRA*0101 Identities = 177/177 (100%) Score = 369 bits 1KLG A HLA-DRA*010201 Identities = 177/177 (100%) Score = 368 bits 1KLG B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1KLU A HLA-DRA*010202 Identities = 179/179 (100%) Score = 373 bits 1KLU A HLA-DRA*0101 Identities = 179/179 (100%) Score = 373 bits 1KLU A HLA-DRA*010201 Identities = 179/179 (100%) Score = 372 bits 1KLU B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1KPR A HLA-E*010304 Identities = 273/274 (99%) Score = 574 bits 1KPR A HLA-E*010303 Identities = 273/274 (99%) Score = 574 bits 1KPR A HLA-E*010302 Identities = 273/274 (99%) Score = 574 bits 1KPR A HLA-E*01030102 Identities = 273/274 (99%) Score = 574 bits 1KPR A HLA-E*01030101 Identities = 273/274 (99%) Score = 574 bits 1KTL A HLA-E*010304 Identities = 273/274 (99%) Score = 574 bits 1KTL A HLA-E*010303 Identities = 273/274 (99%) Score = 574 bits 1KTL A HLA-E*010302 Identities = 273/274 (99%) Score = 574 bits 1KTL A HLA-E*01030102 Identities = 273/274 (99%) Score = 574 bits 1KTL A HLA-E*01030101 Identities = 273/274 (99%) Score = 574 bits 1LO5 A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1LO5 A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1LO5 B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1LP9 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1LP9 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1LP9 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1LP9 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1M05 A HLA-B*080101 Identities = 277/277 (100%) Score = 585 bits 1M6O A HLA-B*44020101 Identities = 276/276 (100%) Score = 580 bits 1MHE A HLA-E*01010103 Identities = 274/274 (100%) Score = 577 bits 1MHE A HLA-E*01010102 Identities = 274/274 (100%) Score = 577 bits 1MHE A HLA-E*01010101 Identities = 274/274 (100%) Score = 577 bits 1MI5 A HLA-B*080101 Identities = 277/277 (100%) Score = 585 bits 1N2R A HLA-B*440302 Identities = 276/276 (100%) Score = 580 bits 1N2R A HLA-B*440301 Identities = 276/276 (100%) Score = 580 bits 1OF2 A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 1OGA A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 1OGA A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 1OGA A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 1OGA A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 1OGT A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 1OGT A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 1P7Q A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 1P7Q A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 1P7Q A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 1P7Q A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 1PYW A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 1PYW A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 1PYW B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1Q94 A HLA-A*110104 Identities = 275/275 (100%) Score = 580 bits 1Q94 A HLA-A*110101 Identities = 275/275 (100%) Score = 580 bits 1QEW A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1QEW A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1QEW A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1QEW A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1QQD A HLA-Cw*0409N Identities = 262/273 (95%) Score = 550 bits 1QQD A HLA-Cw*0430 Identities = 262/273 (95%) Score = 548 bits 1QQD A HLA-Cw*04010103 Identities = 262/273 (95%) Score = 548 bits 1QQD A HLA-Cw*04010102 Identities = 262/273 (95%) Score = 548 bits 1QQD A HLA-Cw*04010101 Identities = 262/273 (95%) Score = 548 bits 1QRN A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 1QRN A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 1QRN A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 1QRN A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 1QSE A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 1QSE A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 1QSE A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 1QSE A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 1QSF A HLA-A*020115 Identities = 273/274 (99%) Score = 575 bits 1QSF A HLA-A*02010103 Identities = 273/274 (99%) Score = 575 bits 1QSF A HLA-A*02010102L Identities = 273/274 (99%) Score = 575 bits 1QSF A HLA-A*02010101 Identities = 273/274 (99%) Score = 575 bits 1QVO A HLA-A*110104 Identities = 275/275 (100%) Score = 580 bits 1QVO A HLA-A*110101 Identities = 275/275 (100%) Score = 580 bits 1R5I A HLA-DRA*010202 Identities = 181/187 (96%) Score = 362 bits 1R5I A HLA-DRA*0101 Identities = 181/187 (96%) Score = 362 bits 1R5I B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1S8D A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1S8D A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1S8D A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1S8D A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1S9V A HLA-DQA1*050101 Identities = 193/193 (100%) Score = 403 bits 1S9V A HLA-DQA1*0505 Identities = 193/193 (100%) Score = 403 bits 1S9V B HLA-DQB1*020101 Identities = 198/198 (100%) Score = 417 bits 1S9V D HLA-DQA1*050101 Identities = 193/193 (100%) Score = 403 bits 1S9V D HLA-DQA1*0505 Identities = 193/193 (100%) Score = 403 bits 1S9V E HLA-DQB1*020101 Identities = 198/198 (100%) Score = 417 bits 1S9W A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 1S9W A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 1S9W A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 1S9W A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 1S9X A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 1S9X A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 1S9X A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 1S9X A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 1S9Y A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 1S9Y A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 1S9Y A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 1S9Y A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 1SEB A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1SEB A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1SEB B HLA-DRB1*010101 Identities = 192/192 (100%) Score = 403 bits 1SEB E HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1SEB E HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1SEB F HLA-DRB1*010101 Identities = 192/192 (100%) Score = 403 bits 1SJE A HLA-DRA*0101 Identities = 180/180 (100%) Score = 375 bits 1SJE A HLA-DRA*010202 Identities = 180/180 (100%) Score = 375 bits 1SJE B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1SJH A HLA-DRA*0101 Identities = 180/180 (100%) Score = 375 bits 1SJH A HLA-DRA*010202 Identities = 180/180 (100%) Score = 375 bits 1SJH B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1SYS A HLA-B*440302 Identities = 276/276 (100%) Score = 580 bits 1SYS A HLA-B*440301 Identities = 276/276 (100%) Score = 580 bits 1SYV A HLA-B*4405 Identities = 276/276 (100%) Score = 580 bits 1T1W A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T1W A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T1W A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T1W A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T1X A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T1X A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T1X A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T1X A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T1Y A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T1Y A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T1Y A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T1Y A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T1Z A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T1Z A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T1Z A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T1Z A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T20 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T20 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T20 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T20 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T21 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T21 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T21 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T21 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T22 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1T22 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1T22 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1T22 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1T5W A HLA-DRA*010202 Identities = 180/180 (100%) Score = 375 bits 1T5W A HLA-DRA*0101 Identities = 180/180 (100%) Score = 375 bits 1T5W B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1T5W D HLA-DRA*010202 Identities = 180/180 (100%) Score = 375 bits 1T5W D HLA-DRA*0101 Identities = 180/180 (100%) Score = 375 bits 1T5W E HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1T5X A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1T5X A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1T5X B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 1TMC A HLA-A*680106 Identities = 175/175 (100%) Score = 370 bits 1TMC A HLA-A*680102 Identities = 175/175 (100%) Score = 370 bits 1TMC A HLA-A*680101 Identities = 175/175 (100%) Score = 370 bits 1TMC A HLA-A*680107 Identities = 175/175 (100%) Score = 368 bits 1TVB A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1TVB A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1TVB A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1TVB A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1TVH A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 1TVH A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 1TVH A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 1TVH A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 1UVQ A HLA-DQA1*010204 Identities = 196/196 (100%) Score = 414 bits 1UVQ A HLA-DQA1*010203 Identities = 196/196 (100%) Score = 414 bits 1UVQ A HLA-DQA1*010202 Identities = 196/196 (100%) Score = 414 bits 1UVQ A HLA-DQA1*010201 Identities = 196/196 (100%) Score = 414 bits 1UVQ B HLA-DQB1*060201 Identities = 196/197 (99%) Score = 415 bits 1UXS A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 1UXS A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 1UXW A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 1W0V A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 1W0V A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 1W0W A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 1W72 A HLA-A*01010101 Identities = 274/274 (100%) Score = 581 bits 1X7Q A HLA-A*110104 Identities = 275/275 (100%) Score = 580 bits 1X7Q A HLA-A*110101 Identities = 275/275 (100%) Score = 580 bits 1XH3 A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 1XH3 A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 1XR8 A HLA-B*15010101 Identities = 261/276 (94%) Score = 543 bits 1XR9 A HLA-B*15010101 Identities = 261/276 (94%) Score = 543 bits 1YDP A HLA-G*010404 Identities = 273/275 (99%) Score = 576 bits 1YDP A HLA-G*010401 Identities = 273/275 (99%) Score = 576 bits 1YMM A HLA-DRA*0101 Identities = 191/191 (100%) Score = 396 bits 1YMM A HLA-DRA*010202 Identities = 191/191 (100%) Score = 396 bits 1YMM B HLA-DRB1*15010102 Identities = 198/198 (100%) Score = 417 bits 1YMM B HLA-DRB1*15010101 Identities = 198/198 (100%) Score = 417 bits 1ZGL A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1ZGL A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1ZGL B HLA-DRB5*010101 Identities = 192/192 (100%) Score = 405 bits 1ZGL D HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1ZGL D HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1ZGL E HLA-DRB5*010101 Identities = 192/192 (100%) Score = 405 bits 1ZGL G HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1ZGL G HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1ZGL H HLA-DRB5*010101 Identities = 192/192 (100%) Score = 405 bits 1ZGL J HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 1ZGL J HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 1ZGL K HLA-DRB5*010101 Identities = 192/192 (100%) Score = 405 bits 1ZHK A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 1ZHK A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 1ZHL A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 1ZSD A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 1ZSD A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2A83 A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 2A83 A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 2AK4 A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 2AV1 A HLA-A*020115 Identities = 273/275 (99%) Score = 576 bits 2AV1 A HLA-A*02010103 Identities = 273/275 (99%) Score = 576 bits 2AV1 A HLA-A*02010102L Identities = 273/275 (99%) Score = 576 bits 2AV1 A HLA-A*02010101 Identities = 273/275 (99%) Score = 576 bits 2AV7 A HLA-A*020115 Identities = 274/275 (99%) Score = 577 bits 2AV7 A HLA-A*02010103 Identities = 274/275 (99%) Score = 577 bits 2AV7 A HLA-A*02010102L Identities = 274/275 (99%) Score = 577 bits 2AV7 A HLA-A*02010101 Identities = 274/275 (99%) Score = 577 bits 2AXF A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 2AXG A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 2AXG A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2BC4 A HLA-DMA*0101 Identities = 199/199 (100%) Score = 412 bits 2BC4 B HLA-DMB*0101 Identities = 199/199 (100%) Score = 421 bits 2BC4 C HLA-DMA*0101 Identities = 199/199 (100%) Score = 412 bits 2BC4 D HLA-DMB*0101 Identities = 199/199 (100%) Score = 421 bits 2BCK A HLA-A*240210 Identities = 277/278 (99%) Score = 585 bits 2BCK A HLA-A*240203 Identities = 277/278 (99%) Score = 585 bits 2BCK A HLA-A*24020102L Identities = 277/278 (99%) Score = 585 bits 2BCK A HLA-A*24020101 Identities = 277/278 (99%) Score = 585 bits 2BNQ A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2BNQ A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2BNQ A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2BNQ A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2BNR A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2BNR A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2BNR A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2BNR A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2BSR A HLA-B*2713 Identities = 275/276 (99%) Score = 578 bits 2BSR A HLA-B*270502 Identities = 275/276 (99%) Score = 578 bits 2BSR A HLA-B*2709 Identities = 275/276 (99%) Score = 577 bits 2BSS A HLA-B*2713 Identities = 275/276 (99%) Score = 578 bits 2BSS A HLA-B*270502 Identities = 275/276 (99%) Score = 578 bits 2BSS A HLA-B*2709 Identities = 275/276 (99%) Score = 577 bits 2BST A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 2BST A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 2BVO A HLA-B*570301 Identities = 276/276 (100%) Score = 582 bits 2BVP A HLA-B*570301 Identities = 276/276 (100%) Score = 582 bits 2BVQ A HLA-B*570301 Identities = 276/276 (100%) Score = 582 bits 2C7U A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2C7U A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2C7U A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2C7U A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2CII A HLA-Cw*0825 Identities = 206/272 (75%) Score = 429 bits 2CII A HLA-Cw*0741 Identities = 207/272 (76%) Score = 429 bits 2CII A HLA-Cw*0703 Identities = 206/273 (75%) Score = 429 bits 2CIK A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 2CIK A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2CLR A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2CLR A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2CLR A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2CLR A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2CLZ A HLA-A*0265 Identities = 205/276 (74%) Score = 437 bits 2D31 A HLA-G*010112 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*010109 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*010106 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010202 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010201 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010106 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010105 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010104 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010103 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010102 Identities = 276/276 (100%) Score = 583 bits 2D31 A HLA-G*01010101 Identities = 276/276 (100%) Score = 583 bits 2DYP A HLA-G*010112 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*010109 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*010106 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010202 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010201 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010106 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010105 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010104 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010103 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010102 Identities = 275/276 (99%) Score = 580 bits 2DYP A HLA-G*01010101 Identities = 275/276 (99%) Score = 580 bits 2ESV A HLA-E*01010103 Identities = 275/275 (100%) Score = 580 bits 2ESV A HLA-E*01010102 Identities = 275/275 (100%) Score = 580 bits 2ESV A HLA-E*01010101 Identities = 275/275 (100%) Score = 580 bits 2F53 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2F53 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2F53 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2F53 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2F54 A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 2F54 A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 2F54 A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 2F54 A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 2FSE A HLA-DRA*0101 Identities = 160/178 (89%) Score = 339 bits 2FSE A HLA-DRA*010202 Identities = 160/178 (89%) Score = 339 bits 2FSE A HLA-DRA*010201 Identities = 160/178 (89%) Score = 338 bits 2FSE B HLA-DRB1*010101 Identities = 172/187 (91%) Score = 372 bits 2FSE C HLA-DRA*0101 Identities = 160/178 (89%) Score = 339 bits 2FSE C HLA-DRA*010202 Identities = 160/178 (89%) Score = 339 bits 2FSE C HLA-DRA*010201 Identities = 160/178 (89%) Score = 338 bits 2FSE D HLA-DRB1*010101 Identities = 172/187 (91%) Score = 372 bits 2FYY A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 2FYY A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2FZ3 A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 2G9H A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2G9H A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2G9H B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2GIT A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GIT A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GIT A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GIT A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2GJ6 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GJ6 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GJ6 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GJ6 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2GT9 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GT9 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GT9 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GT9 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2GTW A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GTW A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GTW A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GTW A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2GTZ A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GTZ A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GTZ A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GTZ A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2GUO A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 2GUO A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 2GUO A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 2GUO A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 2H6P A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 2H6P A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2HJK A HLA-B*5706 Identities = 274/274 (100%) Score = 577 bits 2HJL A HLA-B*5706 Identities = 274/274 (100%) Score = 577 bits 2HLA A HLA-A*680102 Identities = 270/270 (100%) Score = 570 bits 2HLA A HLA-A*680101 Identities = 270/270 (100%) Score = 570 bits 2HLA A HLA-A*680106 Identities = 270/270 (100%) Score = 569 bits 2HN7 A HLA-A*110104 Identities = 275/275 (100%) Score = 580 bits 2HN7 A HLA-A*110101 Identities = 275/275 (100%) Score = 580 bits 2IAM A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2IAM A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2IAM B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2IAN A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2IAN A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2IAN B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2ICW A HLA-DRA*010202 Identities = 179/185 (96%) Score = 359 bits 2ICW A HLA-DRA*0101 Identities = 179/185 (96%) Score = 359 bits 2ICW B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2ICW D HLA-DRA*010202 Identities = 179/185 (96%) Score = 359 bits 2ICW D HLA-DRA*0101 Identities = 179/185 (96%) Score = 359 bits 2ICW E HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2IPK A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2IPK A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2IPK B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2J8U A HLA-A*020115 Identities = 274/275 (99%) Score = 577 bits 2J8U A HLA-A*02010103 Identities = 274/275 (99%) Score = 577 bits 2J8U A HLA-A*02010102L Identities = 274/275 (99%) Score = 577 bits 2J8U A HLA-A*02010101 Identities = 274/275 (99%) Score = 577 bits 2JCC A HLA-A*020115 Identities = 274/275 (99%) Score = 575 bits 2JCC A HLA-A*02010103 Identities = 274/275 (99%) Score = 575 bits 2JCC A HLA-A*02010102L Identities = 274/275 (99%) Score = 575 bits 2JCC A HLA-A*02010101 Identities = 274/275 (99%) Score = 575 bits 2NW3 A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 2NX5 A HLA-B*350101 Identities = 276/276 (100%) Score = 582 bits 2NX5 A HLA-B*3542 Identities = 276/276 (100%) Score = 579 bits 2OJE A HLA-DRA*010202 Identities = 180/186 (96%) Score = 361 bits 2OJE A HLA-DRA*0101 Identities = 180/186 (96%) Score = 361 bits 2OJE B HLA-DRB1*010101 Identities = 190/190 (100%) Score = 399 bits 2P5E A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2P5E A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2P5E A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2P5E A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2P5W A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2P5W A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2P5W A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2P5W A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2PYE A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2PYE A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2PYE A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2PYE A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2Q6W A HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2Q6W A HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2Q6W B HLA-DRB3*01010202 Identities = 190/190 (100%) Score = 400 bits 2Q6W B HLA-DRB3*01010201 Identities = 190/190 (100%) Score = 400 bits 2Q6W D HLA-DRA*0101 Identities = 182/182 (100%) Score = 379 bits 2Q6W D HLA-DRA*010202 Identities = 182/182 (100%) Score = 379 bits 2Q6W E HLA-DRB3*01010202 Identities = 190/190 (100%) Score = 400 bits 2Q6W E HLA-DRB3*01010201 Identities = 190/190 (100%) Score = 400 bits 2RFX A HLA-B*570101 Identities = 275/275 (100%) Score = 578 bits 2SEB A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 2SEB A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 2SEB B HLA-DRB1*040101 Identities = 192/192 (100%) Score = 404 bits 2UWE A HLA-A*020115 Identities = 274/275 (99%) Score = 578 bits 2UWE A HLA-A*02010103 Identities = 274/275 (99%) Score = 578 bits 2UWE A HLA-A*02010102L Identities = 274/275 (99%) Score = 578 bits 2UWE A HLA-A*02010101 Identities = 274/275 (99%) Score = 578 bits 2V2W A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2V2W A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2V2W A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2V2W A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2V2X A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2V2X A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2V2X A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2V2X A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2VLJ A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2VLJ A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2VLJ A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2VLJ A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2VLK A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2VLK A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2VLK A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2VLK A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2VLL A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2VLL A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2VLL A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2VLL A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2VLR A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 2VLR A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 2VLR A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 2VLR A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 2WBJ A HLA-DRA*010202 Identities = 193/193 (100%) Score = 400 bits 2WBJ A HLA-DRA*0101 Identities = 193/193 (100%) Score = 400 bits 2WBJ B HLA-DRB1*15010102 Identities = 198/199 (99%) Score = 417 bits 2WBJ B HLA-DRB1*15010101 Identities = 198/199 (99%) Score = 417 bits 3B3I A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 3B6S A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 3B6S A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 3BGM A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 3BGM A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 3BGM A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 3BGM A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 3BH8 A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 3BH8 A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 3BH8 A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 3BH8 A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 3BH9 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3BH9 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3BH9 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3BH9 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3BHB A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 3BHB A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 3BHB A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 3BHB A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 3BO8 A HLA-A*01010101 Identities = 274/274 (100%) Score = 581 bits 3BP4 A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 3BP4 A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 3BP7 A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 3BVN A HLA-B*140201 Identities = 277/277 (100%) Score = 586 bits 3BW9 A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 3BWA A HLA-B*350801 Identities = 276/276 (100%) Score = 582 bits 3BXN A HLA-B*140201 Identities = 277/277 (100%) Score = 586 bits 3BZE A HLA-E*01010103 Identities = 273/273 (100%) Score = 575 bits 3BZE A HLA-E*01010102 Identities = 273/273 (100%) Score = 575 bits 3BZE A HLA-E*01010101 Identities = 273/273 (100%) Score = 575 bits 3BZF A HLA-E*01010103 Identities = 276/276 (100%) Score = 582 bits 3BZF A HLA-E*01010102 Identities = 276/276 (100%) Score = 582 bits 3BZF A HLA-E*01010101 Identities = 276/276 (100%) Score = 582 bits 3C5J A HLA-DRA*0101 Identities = 181/181 (100%) Score = 377 bits 3C5J A HLA-DRA*010202 Identities = 181/181 (100%) Score = 377 bits 3C5J B HLA-DRB3*030101 Identities = 190/190 (100%) Score = 399 bits 3C9N A HLA-B*15010101 Identities = 261/276 (94%) Score = 543 bits 3CDG A HLA-E*01010103 Identities = 273/273 (100%) Score = 575 bits 3CDG A HLA-E*01010102 Identities = 273/273 (100%) Score = 575 bits 3CDG A HLA-E*01010101 Identities = 273/273 (100%) Score = 575 bits 3CII A HLA-E*01010103 Identities = 273/273 (100%) Score = 575 bits 3CII A HLA-E*01010102 Identities = 273/273 (100%) Score = 575 bits 3CII A HLA-E*01010101 Identities = 273/273 (100%) Score = 575 bits 3CZF A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits 3D18 A HLA-B*2709 Identities = 275/276 (99%) Score = 578 bits 3D25 A HLA-A*020115 Identities = 274/274 (100%) Score = 578 bits 3D25 A HLA-A*02010103 Identities = 274/274 (100%) Score = 578 bits 3D25 A HLA-A*02010102L Identities = 274/274 (100%) Score = 578 bits 3D25 A HLA-A*02010101 Identities = 274/274 (100%) Score = 578 bits 3D39 A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3D39 A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3D39 A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3D39 A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3D3V A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3D3V A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3D3V A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3D3V A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3DTX A HLA-B*270502 Identities = 276/276 (100%) Score = 579 bits 3DTX A HLA-B*2713 Identities = 276/276 (100%) Score = 578 bits 3DX6 A HLA-B*44020101 Identities = 276/276 (100%) Score = 580 bits 3DX7 A HLA-B*440302 Identities = 276/276 (100%) Score = 580 bits 3DX7 A HLA-B*440301 Identities = 276/276 (100%) Score = 580 bits 3DX8 A HLA-B*4405 Identities = 276/276 (100%) Score = 580 bits 3DXA A HLA-B*4405 Identities = 276/276 (100%) Score = 580 bits 3FFC A HLA-B*080101 Identities = 277/277 (100%) Score = 585 bits 3FQN A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQN A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQN A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQN A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FQR A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQR A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQR A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQR A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FQT A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQT A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQT A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQT A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FQU A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQU A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQU A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQU A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FQW A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQW A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQW A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQW A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FQX A HLA-A*020115 Identities = 275/275 (100%) Score = 579 bits 3FQX A HLA-A*02010103 Identities = 275/275 (100%) Score = 579 bits 3FQX A HLA-A*02010102L Identities = 275/275 (100%) Score = 579 bits 3FQX A HLA-A*02010101 Identities = 275/275 (100%) Score = 579 bits 3FT2 A HLA-A*020115 Identities = 274/275 (99%) Score = 577 bits 3FT2 A HLA-A*02010103 Identities = 274/275 (99%) Score = 577 bits 3FT2 A HLA-A*02010102L Identities = 274/275 (99%) Score = 577 bits 3FT2 A HLA-A*02010101 Identities = 274/275 (99%) Score = 577 bits 3FT3 A HLA-A*020115 Identities = 274/275 (99%) Score = 577 bits 3FT3 A HLA-A*02010103 Identities = 274/275 (99%) Score = 577 bits 3FT3 A HLA-A*02010102L Identities = 274/275 (99%) Score = 577 bits 3FT3 A HLA-A*02010101 Identities = 274/275 (99%) Score = 577 bits 3FT4 A HLA-A*020115 Identities = 274/275 (99%) Score = 577 bits 3FT4 A HLA-A*02010103 Identities = 274/275 (99%) Score = 577 bits 3FT4 A HLA-A*02010102L Identities = 274/275 (99%) Score = 577 bits 3FT4 A HLA-A*02010101 Identities = 274/275 (99%) Score = 577 bits 3GJF A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 3GJF A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 3GJF A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 3GJF A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 3HAE A HLA-A*020115 Identities = 276/276 (100%) Score = 582 bits 3HAE A HLA-A*02010103 Identities = 276/276 (100%) Score = 582 bits 3HAE A HLA-A*02010102L Identities = 276/276 (100%) Score = 582 bits 3HAE A HLA-A*02010101 Identities = 276/276 (100%) Score = 582 bits 3HCV A HLA-B*2709 Identities = 276/276 (100%) Score = 579 bits structures with no chains matched to alleles: 52 no matches in strcuture: 1GZP no matches in strcuture: 1GZQ no matches in strcuture: 1JJ2 no matches in strcuture: 1K73 no matches in strcuture: 1K8A no matches in strcuture: 1K9M no matches in strcuture: 1KC8 no matches in strcuture: 1KD1 no matches in strcuture: 1KQS no matches in strcuture: 1M1K no matches in strcuture: 1M90 no matches in strcuture: 1N8R no matches in strcuture: 1NJI no matches in strcuture: 1Q7Y no matches in strcuture: 1Q81 no matches in strcuture: 1Q82 no matches in strcuture: 1Q86 no matches in strcuture: 1QVF no matches in strcuture: 1QVG no matches in strcuture: 1S72 no matches in strcuture: 1UQS no matches in strcuture: 2CDE no matches in strcuture: 2CDF no matches in strcuture: 2CDG no matches in strcuture: 2CJR no matches in strcuture: 2IAL no matches in strcuture: 2O8J no matches in strcuture: 2OTJ no matches in strcuture: 2OTL no matches in strcuture: 3BEV no matches in strcuture: 3BEW no matches in strcuture: 3C5Z no matches in strcuture: 3CC2 no matches in strcuture: 3CC4 no matches in strcuture: 3CC7 no matches in strcuture: 3CCE no matches in strcuture: 3CCJ no matches in strcuture: 3CCL no matches in strcuture: 3CCM no matches in strcuture: 3CCQ no matches in strcuture: 3CCR no matches in strcuture: 3CCS no matches in strcuture: 3CCU no matches in strcuture: 3CCV no matches in strcuture: 3CD6 no matches in strcuture: 3CMA no matches in strcuture: 3CME no matches in strcuture: 3CPW no matches in strcuture: 3F1F no matches in strcuture: 3G4S no matches in strcuture: 3G6E no matches in strcuture: 3G71 structures with allele matches: 221 1A1M A allele HLA-B*5301 1A1O A allele HLA-B*5301 1A6A B allele HLA-DRB1*0301 1AGB A allele HLA-B*0801 1AGC A allele HLA-B*0801 1AGD A allele HLA-B*0801 1AGE A allele HLA-B*0801 1AGF A allele HLA-B*0801 1AKJ A allele HLA-A*0201 1AO7 A allele HLA-A*0201 1B0R A allele HLA-A*0201 1BD2 A allele HLA-A*0201 1D5M B allele HLA-DRB1*0401 1D5X B allele HLA-DRB1*0401 1D5Z B allele HLA-DRB1*0401 1D6E B allele HLA-DRB1*0401 1DUY A allele HLA-A*0201 1DUZ A allele HLA-A*0201 1E27 A allele HLA-B*5101 1E28 A allele HLA-B*5101 1EEY A allele HLA-A*0201 1EFX A allele HLA-Cw*0304 1FYT B allele HLA-DRB1*0101 1H15 B allele HLA-DRB5*0101 1H15 E allele HLA-DRB5*0101 1HDM A allele HLA-DMA*0101 1HDM B allele HLA-DMB*0101 1HHG A allele HLA-A*0201 1HHH A allele HLA-A*0201 1HHI A allele HLA-A*0201 1HHJ A allele HLA-A*0201 1HHK A allele HLA-A*0201 1HQR B allele HLA-DRB5*0101 1HSB A allele HLA-A*6801 1HXY B allele HLA-DRB1*0101 1I4F A allele HLA-A*0201 1I7R A allele HLA-A*0201 1I7T A allele HLA-A*0201 1I7U A allele HLA-A*0201 1IM3 A allele HLA-A*0201 1J8H B allele HLA-DRB1*0401 1JF1 A allele HLA-A*0201 1JGD A allele HLA-B*2709 1JHT A allele HLA-A*0201 1JWM B allele HLA-DRB1*0101 1JWS B allele HLA-DRB1*0101 1JWU B allele HLA-DRB1*0101 1K5N A allele HLA-B*2709 1KLG B allele HLA-DRB1*0101 1KLU B allele HLA-DRB1*0101 1KPR A allele HLA-E*0103 1KTL A allele HLA-E*0103 1LO5 B allele HLA-DRB1*0101 1LP9 A allele HLA-A*0201 1M05 A allele HLA-B*0801 1M6O A allele HLA-B*4402 1MHE A allele HLA-E*0101 1MI5 A allele HLA-B*0801 1N2R A allele HLA-B*4403 1OF2 A allele HLA-B*2709 1OGA A allele HLA-A*0201 1P7Q A allele HLA-A*0201 1PYW B allele HLA-DRB1*0101 1Q94 A allele HLA-A*1101 1QEW A allele HLA-A*0201 1QRN A allele HLA-A*0201 1QSE A allele HLA-A*0201 1QSF A allele HLA-A*0201 1QVO A allele HLA-A*1101 1R5I B allele HLA-DRB1*0101 1S8D A allele HLA-A*0201 1S9V B allele HLA-DQB1*0201 1S9V E allele HLA-DQB1*0201 1S9W A allele HLA-A*0201 1S9X A allele HLA-A*0201 1S9Y A allele HLA-A*0201 1SEB B allele HLA-DRB1*0101 1SEB F allele HLA-DRB1*0101 1SJE B allele HLA-DRB1*0101 1SJH B allele HLA-DRB1*0101 1SYS A allele HLA-B*4403 1SYV A allele HLA-B*4405 1T1W A allele HLA-A*0201 1T1X A allele HLA-A*0201 1T1Y A allele HLA-A*0201 1T1Z A allele HLA-A*0201 1T20 A allele HLA-A*0201 1T21 A allele HLA-A*0201 1T22 A allele HLA-A*0201 1T5W B allele HLA-DRB1*0101 1T5W E allele HLA-DRB1*0101 1T5X B allele HLA-DRB1*0101 1TMC A allele HLA-A*6801 1TVB A allele HLA-A*0201 1TVH A allele HLA-A*0201 1UVQ A allele HLA-DQA1*0102 1UVQ B allele HLA-DQB1*0602 1UXW A allele HLA-B*2709 1W0W A allele HLA-B*2709 1W72 A allele HLA-A*0101 1X7Q A allele HLA-A*1101 1XR8 A allele HLA-B*1501 1XR9 A allele HLA-B*1501 1YDP A allele HLA-G*0104 1YMM B allele HLA-DRB1*1501 1ZGL B allele HLA-DRB5*0101 1ZGL E allele HLA-DRB5*0101 1ZGL H allele HLA-DRB5*0101 1ZGL K allele HLA-DRB5*0101 1ZHL A allele HLA-B*3508 2AK4 A allele HLA-B*3508 2AV1 A allele HLA-A*0201 2AV7 A allele HLA-A*0201 2AXF A allele HLA-B*3508 2BC4 A allele HLA-DMA*0101 2BC4 B allele HLA-DMB*0101 2BC4 C allele HLA-DMA*0101 2BC4 D allele HLA-DMB*0101 2BCK A allele HLA-A*2402 2BNQ A allele HLA-A*0201 2BNR A allele HLA-A*0201 2BVO A allele HLA-B*5703 2BVP A allele HLA-B*5703 2BVQ A allele HLA-B*5703 2C7U A allele HLA-A*0201 2CLR A allele HLA-A*0201 2CLZ A allele HLA-A*0265 2D31 A allele HLA-G*0101 2DYP A allele HLA-G*0101 2ESV A allele HLA-E*0101 2F53 A allele HLA-A*0201 2F54 A allele HLA-A*0201 2FSE B allele HLA-DRB1*0101 2FSE D allele HLA-DRB1*0101 2FZ3 A allele HLA-B*3508 2G9H B allele HLA-DRB1*0101 2GIT A allele HLA-A*0201 2GJ6 A allele HLA-A*0201 2GT9 A allele HLA-A*0201 2GTW A allele HLA-A*0201 2GTZ A allele HLA-A*0201 2GUO A allele HLA-A*0201 2HJK A allele HLA-B*5706 2HJL A allele HLA-B*5706 2HLA A allele HLA-A*6801 2HN7 A allele HLA-A*1101 2IAM B allele HLA-DRB1*0101 2IAN B allele HLA-DRB1*0101 2ICW B allele HLA-DRB1*0101 2ICW E allele HLA-DRB1*0101 2IPK B allele HLA-DRB1*0101 2J8U A allele HLA-A*0201 2JCC A allele HLA-A*0201 2NW3 A allele HLA-B*3508 2OJE B allele HLA-DRB1*0101 2P5E A allele HLA-A*0201 2P5W A allele HLA-A*0201 2PYE A allele HLA-A*0201 2Q6W B allele HLA-DRB3*0101 2Q6W E allele HLA-DRB3*0101 2RFX A allele HLA-B*5701 2SEB B allele HLA-DRB1*0401 2UWE A allele HLA-A*0201 2V2W A allele HLA-A*0201 2V2X A allele HLA-A*0201 2VLJ A allele HLA-A*0201 2VLK A allele HLA-A*0201 2VLL A allele HLA-A*0201 2VLR A allele HLA-A*0201 2WBJ B allele HLA-DRB1*1501 3B3I A allele HLA-B*2709 3BGM A allele HLA-A*0201 3BH8 A allele HLA-A*0201 3BH9 A allele HLA-A*0201 3BHB A allele HLA-A*0201 3BO8 A allele HLA-A*0101 3BP7 A allele HLA-B*2709 3BVN A allele HLA-B*1402 3BW9 A allele HLA-B*3508 3BWA A allele HLA-B*3508 3BXN A allele HLA-B*1402 3BZE A allele HLA-E*0101 3BZF A allele HLA-E*0101 3C5J B allele HLA-DRB3*0301 3C9N A allele HLA-B*1501 3CDG A allele HLA-E*0101 3CII A allele HLA-E*0101 3CZF A allele HLA-B*2709 3D18 A allele HLA-B*2709 3D25 A allele HLA-A*0201 3D39 A allele HLA-A*0201 3D3V A allele HLA-A*0201 3DX6 A allele HLA-B*4402 3DX7 A allele HLA-B*4403 3DX8 A allele HLA-B*4405 3DXA A allele HLA-B*4405 3FFC A allele HLA-B*0801 3FQN A allele HLA-A*0201 3FQR A allele HLA-A*0201 3FQT A allele HLA-A*0201 3FQU A allele HLA-A*0201 3FQW A allele HLA-A*0201 3FQX A allele HLA-A*0201 3FT2 A allele HLA-A*0201 3FT3 A allele HLA-A*0201 3FT4 A allele HLA-A*0201 3GJF A allele HLA-A*0201 3HAE A allele HLA-A*0201 3HCV A allele HLA-B*2709 1A1N A allele group HLA-B*35 1A6A A allele group HLA-DRA*01 1A9B A allele group HLA-B*35 1A9E A allele group HLA-B*35 1CG9 A allele group HLA-B*35 1D5M A allele group HLA-DRA*01 1D5X A allele group HLA-DRA*01 1D5Z A allele group HLA-DRA*01 1D6E A allele group HLA-DRA*01 1FYT A allele group HLA-DRA*01 1H15 A allele group HLA-DRA*01 1H15 D allele group HLA-DRA*01 1HQR A allele group HLA-DRA*01 1HSA A allele group HLA-B*27 1HXY A allele group HLA-DRA*01 1IM9 A allele group HLA-Cw*04 1J8H A allele group HLA-DRA*01 1JGE A allele group HLA-B*27 1JWM A allele group HLA-DRA*01 1JWS A allele group HLA-DRA*01 1JWU A allele group HLA-DRA*01 1KLG A allele group HLA-DRA*01 1KLU A allele group HLA-DRA*01 1LO5 A allele group HLA-DRA*01 1OGT A allele group HLA-B*27 1PYW A allele group HLA-DRA*01 1QQD A allele group HLA-Cw*04 1R5I A allele group HLA-DRA*01 1S9V A allele group HLA-DQA1*05 1S9V D allele group HLA-DQA1*05 1SEB A allele group HLA-DRA*01 1SEB E allele group HLA-DRA*01 1SJE A allele group HLA-DRA*01 1SJH A allele group HLA-DRA*01 1T5W A allele group HLA-DRA*01 1T5W D allele group HLA-DRA*01 1T5X A allele group HLA-DRA*01 1UXS A allele group HLA-B*27 1W0V A allele group HLA-B*27 1XH3 A allele group HLA-B*35 1YMM A allele group HLA-DRA*01 1ZGL A allele group HLA-DRA*01 1ZGL D allele group HLA-DRA*01 1ZGL G allele group HLA-DRA*01 1ZGL J allele group HLA-DRA*01 1ZHK A allele group HLA-B*35 1ZSD A allele group HLA-B*35 2A83 A allele group HLA-B*27 2AXG A allele group HLA-B*35 2BSR A allele group HLA-B*27 2BSS A allele group HLA-B*27 2BST A allele group HLA-B*27 2CIK A allele group HLA-B*35 2FSE A allele group HLA-DRA*01 2FSE C allele group HLA-DRA*01 2FYY A allele group HLA-B*35 2G9H A allele group HLA-DRA*01 2H6P A allele group HLA-B*35 2IAM A allele group HLA-DRA*01 2IAN A allele group HLA-DRA*01 2ICW A allele group HLA-DRA*01 2ICW D allele group HLA-DRA*01 2IPK A allele group HLA-DRA*01 2NX5 A allele group HLA-B*35 2OJE A allele group HLA-DRA*01 2Q6W A allele group HLA-DRA*01 2Q6W D allele group HLA-DRA*01 2SEB A allele group HLA-DRA*01 2WBJ A allele group HLA-DRA*01 3B6S A allele group HLA-B*27 3BP4 A allele group HLA-B*27 3C5J A allele group HLA-DRA*01 3DTX A allele group HLA-B*27 2CII A alleles ['HLA-Cw*0825', 'HLA-Cw*0741', 'HLA-Cw*0703'] chains with allele matches: 209 chains with allele group matches: 73 chains with ungrouped allele matches: 1