Semantic resources project/Meeting notes/2010-04-29

Meeting Notes : 4/29/2010

From TWD
Attendance: TWD, JAR, KT, PC, AR

Notes:


 * 5th Resource
 * AR had offered the "cell line" idea after a reasonable discussion with a contact of SD.
 * Discussion of meeting with AR, SD, and HSCI others
 * Next steps:
 * Reach out to other SCF communities to ask about Cell Line needs
 * SCF should talk to us about cell line interface
 * PC: the SCF group agrees that CL is the better resource option
 * AR: someone needs to talk to PDOnline and AlzForum to ask about cell line resources.


 * Mouse Debrief
 * Needs requirements from the SCF communities
 * JAR will summarize the contents of the mailing list discussion


 * PRO Meeting Debrief


 * Antibody Debrief

Action Items:


 * TWD: send mail to SD on the list, asking about the diagram
 * PC: send email to the group about the CL 5th resource decision?

From Kaitlin
--

Participants: Kaitlin Thaney, Tim Danford, Jonathan Rees, Paolo Ciccarese, Alan Ruttenberg

5th resource * AR cells - had good conversation with SD and reps from stem cell institute. to display and request cell types.

* diagram: alex and terry mehan (sp?) doing most of on the ground curation for cell line ontology, diagram was shared, terry annotated it with stuff they had and didnt have, expressed in the call that this was something CLO really wanted to get right, and add'l info that this collaboration could do, etc

* prepublication facts - whether or not to include them in the ontology or wait until publication.

* if we choose this, next steps, mediate collaboration, reach out to other communities that scf serving and swan- push on scf for user interface that they should have around this (display / request terms)

* PC to send note asking for consensus on having cell lines as 5th.

* PC to send request out to pd online (SD) / alzforum (EW) for information to include.

Mouse debrief

* want to review proposed requirements from the list so we can understand what they are, have JAR write them into a short list, and then the group can assess if it's doable, what portion is doable.

PRO meeting

Antibody - submission to OBI

(issues organizing in protege, put them in a simple table on the wiki for the time being instead.
 * TD: revised visible representation ,work on textual definitions


 * TD to copy definitions back into OWL, direct to AR for review

RDF triplestore that TD can access

Action Items


 * Check with TC about licensing


 * PC to send note asking for consensus on having cell lines as 5th.

information to include.
 * PC to send request out to pd online (SD) / alzforum (EW) for

pull into short list of items that we can go thru carefully.
 * JAR to review mouse model list, tease out proposed requirements,

local ids, move broker conversation forward
 * TD/PC to follow up with Cecilia on providing new format to create