Semantic resources project/Meeting notes/2010-04-01

Meeting Notes: 4/1/2010

From TWD
Attendance: AR, JAR, EW, KT, PC, TWD

Notes:


 * Discussion of licensing meeting earlier this week.
 * Still awaiting resolution from 3rd parties on acceptable new licenses.
 * Discussion of Annotation tool
 * AR: we need to move forward independently of updates from CK
 * TD: agreed -- I'll go ahead and add update information to the annotation.
 * Prep for call with DN and GW.

Action Items:


 * IProClass synonyms as SKOS synonyms? -> TWD
 * Annotation:
 * Source notes for TAXON, PRO, etc annotation.
 * Fix the stripping-of-reference issue.
 * Integrate the APP PRO annotations -- lookup? text indexing?
 * Handle indexing through subclass synonyms.
 * TD: Help GWEN format the family IDs.

From KT

 * Prep


 * Darren said he accepted some uncontroversial changes. Are we OK with those edits?

* What was "controversial" and why weren't the changes accepted? Logic behind.


 * Discussion of DerivesFrom OR


 * Installation of Annotation Tool


 * Antibody Model Revision


 * Call Darren / Gwen


 * Related synonyms: one you can't discern whether broad, narrow, exact

** AR wants to discern exact terms from related -- where related would be considered as an index term.

** nothing that Darren can do to relabel, since it's in OBO format

** understanding of the interpretation


 * Generic Terms

* will makes species generic terms for mutants as they are identified

* by default, everything in PRO is species generic, unless one is requested and they will create a child that species specific


 * Get list of families from PRO

* EW to file through to Darren as formal PRO request


 * Use of relationship key in PRO terms (0071 the C80 term, derives_from)

* is each of the relationship:derives_from an implied OR? Yes * AR knows how to do this in OBO - create a class called precursor of  which will be a union_of protein classes, then single derives_from which will point to that union * TD could create / format proposed pair of terms to send to Darren as an example * OBO's documentation for relationship needs to be updated so it's a bit more clear for multiples, specifically in terms of multiple relationships


 * Discussion of 5th Resource -- POSTPONED

Action Items
 * TD: IProclass synonyms as SKOS synonyms (of biothesaurus) to create a NeuroCommons bundle.
 * TD: Source notes for taxos pro etc annotation
 * TD: fix the stripping of reference issue
 * TD: Integrate the APP PRO annotation
 * EW to file through to Darren as formal PRO request, TD help Gwen format the family IDs